rs352605 chr5:107557441 C>T
- Sequence
ttcagccacacgctgcctcaggaa[C/T]cacgcagcccactggcagagttga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HKC8 (kidney proximal tubule cell line) MDA-MB-231 (breast adenocarcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
- ASB for transcription factors
- ESR1_HUMAN GATA3_HUMAN FOXA1_HUMAN E2F8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.35 | 1.35 | 2.42 | n/a | No Hit | |||
| GATA3_HUMAN | -0.47 | 2.33 | 2.40 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.07 | 1.38 | 2.55 | n/a | No Hit | |||
| E2F8_HUMAN | -2.75 | 2.65 | 1.00 | n/a | No Hit | |||
| BRD4_HUMAN | -0.54 | 2.09 | 1.75 | n/a | n/a |
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Motif analysis
