rs352606 chr5:107557156 G>A
- Sequence
ttatatgtcccttttgaactgtaa[G/A]ctacacagggcacagatcgtatct
- ASB in cell types
- ZR-75-1 (invasive ductal carcinoma) LNCaP (prostate carcinoma) BEAS-2B (bronchial epithelium) breast tumor
- ASB for transcription factors
- FOXA1_HUMAN GCR_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.32 | 1.49 | 1.51 | 2.55 | Concordant | |||
| GCR_HUMAN | 0.12 | 0.96 | 1.61 | n/a | No Hit | |||
| ESR1_HUMAN | 2.73 | 1.00 | 2.00 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
