rs353251 chr5:149371622 G>A
- Sequence
tggacactgccaggtgctggaggt[G/A]cagtgctgagcaagggatgaggcc
- ASB in cell types
- T47D (invasive ductal carcinoma) K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.60 | 0.95 | 1.53 | 0.04 | Weak Concordant | |||
| STAG1_HUMAN | 0.69 | 0.00 | 1.00 | n/a | n/a |
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Motif analysis
