rs353491 chr5:177005946 C>G
- Sequence
cggcgctgcctaagcacctggaaa[C/G]gcgccggccctgcgggggcgaaat
- ASB in cell types
- GM02255 (Lymphoblastoid Cell Lines) K562 (myelogenous leukemia) CD34+ hematopoietic stem cells-derived proerythroblasts GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- GATA1_HUMAN ATF7_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | 3.05 | -0.16 | 1.88 | n/a | No Hit | |||
| ATF7_HUMAN | 2.76 | -4.99 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood