rs353542 chr9:131137887 A>G

Sequence
ttgatcttccactttgtgagagga[A/G]tgtcttagcactcccaccctttcc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
KDM1A_HUMAN IKZF1_HUMAN HDAC2_HUMAN MTG16_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KDM1A_HUMAN n/a 1.77 1.002.4·10-4 5.00 n/a n/a
IKZF1_HUMAN n/a 2.16 1.001.2·10-3 4.50 n/a n/a
HDAC2_HUMAN n/a 2.28 1.003.2·10-3 5.00 n/a n/a
MTG16_HUMAN n/a 1.66 1.003.2·10-3 5.00 n/a n/a
HDAC1_HUMAN n/a 2.04 1.005.4·10-3 4.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  serum creatinine
GTEx eQTL Cells_Cultured_fibroblasts,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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