rs354043 chr7:149600241 C>T

Sequence
caacagattaaaggagaaaaatca[C/T]gtcattcaaatagatgaagaaaaa
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ATF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN 3.65 -3.64 7.0·10-71.00 1.00 -0.41 Weak Concordant
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Motif analysis

ATF2_HUMAN Weak Concordant
ATF2_HUMAN pic

Genetic associations

GRASP adiponectin levels,  ldl cholesterol,  total cholesterol,  triglycerides
Finemapping multiple sclerosis
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Muscle_Skeletal,  Skin_Sun_Exposed_Lower_leg,  Spleen

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