rs354990 chr5:174504148 C>T

Sequence
atatttttgtgtaatctggaaagg[C/T]gatttatgaggccgataaaaatga
ASB in cell types
VCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
HXB13_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HXB13_HUMAN 2.46 0.07 5.6·10-31.00 1.80 0.02 Weak Discordant
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Motif analysis

HXB13_HUMAN Weak Discordant
HXB13_HUMAN pic

Genetic associations

GRASP birth weight,  college completion,  hdl cholesterol change with statins,  ldl cholesterol,  total cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Artery_Aorta,  Small_Intestine_Terminal_Ileum

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