rs35588 chr16:16046021 A>G
- Sequence
gggctgtctatcggaaggtagggg[A/G]cgctgtgccattggcatgtggccc
- ASB in cell types
- pancreas RCC 7860 (Renal cell carcinoma) HCT-116 (colon carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN TF65_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.15 | 3.52 | 2.42 | 3.69 | Concordant | |||
| RAD21_HUMAN | -2.99 | 3.05 | 1.00 | n/a | n/a | |||
| TF65_HUMAN | 0.32 | 2.72 | 2.60 | n/a | No Hit | |||
| IKZF2_HUMAN | n/a | 2.08 | 1.00 | n/a | n/a |
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Motif analysis
