rs35719 chr12:100573882 C>A

Sequence
agcctgagggctccaggagccccc[C/A]gctctctgaggccccgaagctgag
ASB in cell types
keratinocytes HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
SNAI2_HUMAN RBM25_HUMAN ESR1_HUMAN JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN 3.28 n/a 1.9·10-51.00 1.50 n/a No Hit
RBM25_HUMAN 2.06 n/a 5.1·10-41.00 3.00 n/a n/a
ESR1_HUMAN 0.98 -0.20 1.1·10-31.00 1.90 n/a No Hit
JUN_HUMAN 0.39 1.49 0.980.01 1.00 n/a No Hit
CDN1B_HUMAN 0.94 0.30 0.050.93 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Heart_Atrial_Appendage,  Liver,  Nerve_Tibial,  Pancreas,  Testis,  Thyroid

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