rs358703 chr3:155852287 C>A

Sequence
gcctggccaacatagtgagacagc[C/A]cccccgacccccaactatctcaat
ASB in cell types
HEK293T (embryonic kidney)
ASB for transcription factors
PRDM9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PRDM9_HUMAN 2.56 n/a 5.7·10-31.00 2.00 3.73 Discordant
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Motif analysis

PRDM9_HUMAN Discordant
PRDM9_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg

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