rs359552 chr3:155555229 C>T
- Sequence
cctgtctcttgtgctagagcctgg[C/T]taatcattcactaaccctgtttct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) pancreatic ductal adenocarcinoma
- ASB for transcription factors
- HTF4_HUMAN IKZF1_HUMAN ARNT_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | -2.84 | 2.74 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | -0.58 | 1.83 | 1.25 | n/a | n/a | |||
| ARNT_HUMAN | -1.93 | 2.46 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 0.11 | 2.24 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Thyroid