rs360829 chr3:13012586 G>A

Sequence
ctggcctgtcacagggctggtgac[G/A]accgaatgaaaggaaatgcctaat
ASB in cell types
CD34+ hematopoietic stem cells monocytes from periferal blood ARP-1(Plasma cell myeloma)
ASB for transcription factors
SPI1_HUMAN TIF1B_HUMAN IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 0.77 0.40 0.011.00 1.43 n/a No Hit
TIF1B_HUMAN 2.67 n/a 0.011.00 2.00 n/a n/a
IKZF1_HUMAN n/a 1.67 1.000.02 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP response to lithium treatment for bipolar disorder,  rheumatoid arthritis,  total cholesterol change with statins
GTEx eQTL Adipose_Visceral_Omentum,  Whole_Blood

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