rs36100017 chr11:71563682 C>T
- Sequence
tcggttcagctccctctgcagtca[C/T]gcctgagaaccacaagtgagacac
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) GM12892 (female B-cells lymphoblastoid cell line) THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN MEIS2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.19 | 0.35 | 1.47 | 0.00 | Weak Discordant | |||
| RAD21_HUMAN | 2.65 | 0.36 | 1.51 | n/a | n/a | |||
| STAG1_HUMAN | 2.89 | -0.07 | 2.11 | n/a | n/a | |||
| MEIS2_HUMAN | 2.28 | n/a | 2.00 | n/a | No Hit | |||
| ZNF24_HUMAN | 2.42 | -0.61 | 1.67 | n/a | No Hit |
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Motif analysis
