rs36153 chr5:66864715 C>A
- Sequence
gggatgaagacacaaggagaagac[C/A]gccatctagaggccaaaattaggc
- ASB in cell types
- GM18951 (B-cells Lymphoblastoid Cell Lines) IPSC-derived bipolar neuron adrenal gland LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.71 | -0.07 | 1.67 | -4.91 | Concordant | |||
| STAG1_HUMAN | 2.12 | -1.03 | 2.80 | n/a | n/a | |||
| RAD21_HUMAN | 1.99 | -1.35 | 1.38 | n/a | n/a | |||
| SPI1_HUMAN | 2.04 | 0.01 | 1.81 | -0.19 | Weak Concordant |
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Motif analysis
