rs363796 chr17:76003551 C>T
- Sequence
cttgggtatactgattgttcaacc[C/T]ggaagcctcccccaggataagtgc
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- ELF3_HUMAN ETV5_HUMAN FOXA1_HUMAN KDM6A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF3_HUMAN | 2.92 | n/a | 2.00 | -2.46 | Concordant | |||
| ETV5_HUMAN | 2.24 | n/a | 2.00 | -3.72 | Concordant | |||
| FOXA1_HUMAN | 1.42 | -0.28 | 1.86 | n/a | No Hit | |||
| KDM6A_HUMAN | 2.79 | n/a | 2.00 | n/a | n/a | |||
| GATD1_HUMAN | 2.71 | -1.91 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GRASP maternal transmission distortion, sporadic creutzfeldt-jakob disease, systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood