rs364790 chr22:22902130 A>G
- Sequence
cagttgaaaatccccattccacac[A/G]agaccgtttagcaggaaaggagtc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MCF10A (breast epithelial cells)
- ASB for transcription factors
- TEAD4_HUMAN SRF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TEAD4_HUMAN | -2.26 | 3.06 | 2.00 | -1.67 | Weak Discordant | |||
| SRF_HUMAN | -2.13 | 2.27 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Pancreas, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood