rs365396 chr5:141524913 T>C

Sequence
ccagcgccacctgctggctgagca[T/C]caccagtgcagctgacctacattc
ASB in cell types
breast tumor CD14+ monocytes adult erythroblasts
ASB for transcription factors
STAT1_HUMAN KDM6A_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.67 -4.89 3.1·10-31.00 2.00 n/a No Hit
KDM6A_HUMAN 2.01 n/a 6.1·10-31.00 3.00 n/a n/a
ESR1_HUMAN 2.88 -0.15 7.5·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol change with statins,  infant head circumference
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Nucleus_accumbens_basal_ganglia,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Pituitary,  Thyroid

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