rs366576 chr16:89574773 C>A
- Sequence
ccgccctgcagccgcgcccggcgc[C/A]atcccgccgtccgaccgcgagggg
- ASB in cell types
- glioblastoma cells GM02255 (Lymphoblastoid Cell Lines) RCC 7860 (Renal cell carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.34 | 1.61 | 1.36 | n/a | No Hit | |||
| STAG1_HUMAN | -0.10 | 1.02 | 1.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Muscle_Skeletal, Pancreas, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach