rs367342 chr20:43657308 G>T
- Sequence
ggtccagagcctctgacccacact[G/T]ggaagtcatggaccgttcaggggt
- ASB in cell types
- LNCaP (prostate carcinoma) HEK293 (embryonic kidney) HCT-116 (colon carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- MAON_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAON_HUMAN | 2.00 | -1.36 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | -1.54 | 2.48 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Cerebellum, Cells_EBV-transformed_lymphocytes, Esophagus_Muscularis, Nerve_Tibial, Spleen, Testis, Whole_Blood