rs367948 chr8:26577600 G>C
- Sequence
cccgaagccccgccgtctcggggt[G/C]ccgcccctccccccggccgcgacg
- ASB in cell types
- foreskin keratinocyte GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN OLIG2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.05 | 2.03 | 1.52 | 0.69 | Weak Concordant | |||
| STAG1_HUMAN | 0.02 | 1.45 | 1.00 | n/a | n/a | |||
| OLIG2_HUMAN | -1.47 | 2.04 | 1.00 | n/a | No Hit |
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Motif analysis
