rs367996 chr19:11293797 A>G
- Sequence
agttccgtgggtgtgtgatgtagg[A/G]atctggggcacgggaagttattct
- ASB in cell types
- neutrophils from periferal blood HCASMC (Human coronary artery smooth muscle cells) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TCF21_HUMAN CTCF_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 1.77 | n/a | 3.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.84 | 0.34 | 1.25 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.79 | -0.15 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, ldl cholesterol, primary rhegmatogenous retinal detachment, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Colon_Sigmoid, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood