rs368047 chr16:84475762 C>G
- Sequence
cctgccaacaggtttgctggaggc[C/G]atcactccctgtcaccaaggttat
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MCF7 WS8 cells SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN GRHL2_HUMAN AP2C_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.26 | 1.26 | 2.50 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.34 | 1.22 | 1.82 | n/a | No Hit | |||
| GRHL2_HUMAN | -0.13 | 1.54 | 2.33 | n/a | No Hit | |||
| AP2C_HUMAN | -0.56 | 2.19 | 2.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis