rs37024 chr16:56932159 T>G

Sequence
ggcgcgcgccccagagacgtgaac[T/G]gtcgttgcagagattgcgggcggc
ASB in cell types
A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) spleen Peyer's patch
ASB for transcription factors
CTCF_HUMAN JUN_HUMAN HTF4_HUMAN ZN449_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.32 1.66 1.003.2·10-11 1.38 n/a No Hit
JUN_HUMAN 0.33 1.09 1.000.02 1.79 n/a No Hit
HTF4_HUMAN 2.36 -2.38 0.031.00 1.00 n/a No Hit
ZN449_HUMAN -1.86 2.66 1.000.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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