rs37025 chr16:56932099 G>A

Sequence
acagagcgttctgtccgcagagcc[G/A]ggcgcggggcttctataaaaggcg
ASB in cell types
primary B-CLL cells A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) Peyer's patch
ASB for transcription factors
CTCF_HUMAN HTF4_HUMAN ZN449_HUMAN CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.07 1.65 1.004.8·10-12 1.57 n/a No Hit
HTF4_HUMAN 2.89 -2.77 1.8·10-31.00 1.00 3.92 Discordant
ZN449_HUMAN -1.98 2.78 1.000.03 2.00 n/a No Hit
CREB1_HUMAN 0.24 1.23 1.000.04 2.67 n/a No Hit
BRD4_HUMAN 0.40 2.12 0.400.05 1.25 n/a n/a
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Motif analysis

HTF4_HUMAN Discordant
HTF4_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Thyroid

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