rs372535 chr19:48107546 T>C
- Sequence
gggtaacgccagcgtctgggaaga[T/C]gcccattgcctagcggaccttggt
- ASB in cell types
- CD14+ monocytes macrophages BJ (fibroblasts) HepG2 (hepatoblastoma)
- ASB for transcription factors
- STAT1_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.43 | -3.77 | 2.50 | 0.71 | Weak Discordant | |||
| CEBPB_HUMAN | 1.27 | 0.18 | 1.28 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood