rs373267 chr21:45923406 C>A
- Sequence
ctgtgctactgcagccactccttt[C/A]atgaaacaagaggcccaggcaacc
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) T47D (invasive ductal carcinoma) GM12878 (female B-cells lymphoblastoid cell line) epidermal keratinocytes
- ASB for transcription factors
- STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.03 | 2.37 | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, hdl cholesterol, infant head circumference, microalbuminuria, total cholesterol, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pituitary, Spleen, Stomach, Thyroid, Whole_Blood