rs3734642 chr6:125301727 T>G
- Sequence
gcaggactggggcctttccggaat[T/G]cggcgtggcggacgcggcgcagga
- ASB in cell types
- HepG2 (hepatoblastoma) CD14+ monocytes
- ASB for transcription factors
- STAT1_HUMAN SKI_HUMAN RFOX2_HUMAN ETV4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.11 | -0.37 | 2.00 | -0.35 | Weak Concordant | |||
| SKI_HUMAN | n/a | 1.30 | 2.00 | n/a | n/a | |||
| RFOX2_HUMAN | -0.41 | 1.73 | 2.00 | n/a | n/a | |||
| ETV4_HUMAN | -1.72 | 2.77 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood