rs3738398 chr1:231626594 G>C

Sequence
aactttctgaggtcctgagatccc[G/C]gagacaggctgtgagggccgctgg
ASB in cell types
HEK293 (embryonic kidney) CAR-T cells GM12878 (female B-cells lymphoblastoid cell line) macrophages form periferal blood
ASB for transcription factors
JUN_HUMAN IRF4_HUMAN IKZF1_HUMAN ZEB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN 0.22 1.30 1.001.9·10-4 1.36 n/a No Hit
IRF4_HUMAN -1.00 1.42 1.002.2·10-4 1.00 n/a No Hit
IKZF1_HUMAN 0.07 2.24 1.001.8·10-3 1.12 n/a n/a
ZEB1_HUMAN n/a 2.91 1.004.8·10-3 3.00 n/a No Hit
CDN1B_HUMAN -0.30 1.04 1.008.7·10-3 1.43 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Whole_Blood

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