rs3740053 chr10:67884577 A>G
- Sequence
ggtctggcccgcgtgggtggcggg[A/G]gcgccgagagggcgggggcggcga
- ASB in cell types
- HCT-116 (colon carcinoma) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- USF1_HUMAN E2F1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | 2.77 | -4.19 | 1.50 | n/a | No Hit | |||
| E2F1_HUMAN | 1.46 | -1.39 | 1.29 | -3.82 | Concordant |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Putamen_basal_ganglia, Heart_Atrial_Appendage, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Testis, Whole_Blood