rs3740253 chr10:78033930 C>T
- Sequence
tgagtctccctgggcccgtgcagt[C/T]atctgccgcgtatccgagccatcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) CD14+ monocytes A549 (lung carcinoma)
- ASB for transcription factors
- ESR1_HUMAN STAT1_HUMAN HMGX4_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.16 | -0.29 | 2.25 | n/a | No Hit | |||
| STAT1_HUMAN | 2.22 | 0.92 | 1.67 | n/a | No Hit | |||
| HMGX4_HUMAN | 2.54 | -2.58 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 0.88 | 0.67 | 1.72 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid