rs3740254 chr10:78033793 A>G
- Sequence
cgcggtcagcctcgtggcgcgccc[A/G]cgcccccacgccggctcttcccgg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- EGR1_HUMAN LMBL2_HUMAN EP400_HUMAN P66B_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 1.55 | -1.53 | 1.33 | -2.75 | Concordant | |||
| LMBL2_HUMAN | -2.05 | 2.05 | 1.00 | n/a | n/a | |||
| EP400_HUMAN | -0.88 | 0.88 | 1.00 | n/a | n/a | |||
| P66B_HUMAN | 2.49 | -2.14 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial