rs3740512 chr10:97318988 C>T
- Sequence
ggtgggtgggtgtgtgttagtgtg[C/T]gtgcttgcttgtgtgtggaagaaa
- ASB in cell types
- CD14+ monocytes HKC8 (kidney proximal tubule cell line)
- ASB for transcription factors
- STAT1_HUMAN E2F8_HUMAN ARNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -5.17 | 3.04 | 2.00 | n/a | No Hit | |||
| E2F8_HUMAN | 2.67 | -2.41 | 1.00 | n/a | No Hit | |||
| ARNT_HUMAN | 2.09 | -3.77 | 1.50 | -3.23 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd