rs3740777 chr11:76783200 C>A

Sequence
aggctccgcgggcggggcgcgcgc[C/A]gagagaggctggcactttggcgac
ASB in cell types
HEK293 (embryonic kidney) 22RV1 (prostate carcinoma)
ASB for transcription factors
ZIC2_HUMAN TCF21_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZIC2_HUMAN -1.70 2.07 1.000.02 1.00 n/a No Hit
TCF21_HUMAN 2.07 n/a 0.041.00 2.50 n/a No Hit
ANDR_HUMAN 2.29 0.03 0.041.00 1.62 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Kidney_Cortex,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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