rs3740799 chr11:35619764 G>A
- Sequence
cgagcggaccgcgcggcgcgtcct[G/A]gagctgcaccgcggacaggacgcc
- ASB in cell types
- MSC (mesenchymal stem cells) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- CHD1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CHD1_HUMAN | -2.58 | 2.89 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | -0.33 | 1.40 | 1.07 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic