rs3741201 chr11:18013058 C>G
- Sequence
ccgggagggacggcacgggggcgg[C/G]gcctgccgggggtaggtgagcgcc
- ASB in cell types
- pancreas prostate gland GM02630 (Fanconi anemi) esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN BHE40_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.24 | 2.46 | 1.40 | -3.91 | Discordant | |||
| BHE40_HUMAN | 0.72 | n/a | 1.50 | -1.34 | Weak Concordant | |||
| STAG1_HUMAN | -0.34 | 1.08 | 1.06 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood