rs3741410 chr11:48147112 T>G
- Sequence
gtgttctgcatttggccagtccta[T/G]ttcctctgcgcccccagctgggcg
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM19239 (male B-cells lymphoblastoid cell line) GM19240 (B cells Lymphoblastoid Cell Lines) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.32 | 2.60 | 1.50 | n/a | No Hit | |||
| STAG1_HUMAN | -2.16 | 2.29 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, arthritis including non-rheumatoid, attention-deficit/hyperactivity disorder (adhd) in adolescents, fasting blood glucose, hdl cholesterol, height, late onset alzheimers disease, longstanding arthritis, neuroblastoma (brain cancer), rheumatoid arthritis, systolic blood pressure (sbp), total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus, Whole_Blood