rs3741605 chr12:66302475 T>C
- Sequence
agcttcgctgcctttcaggtttta[T/C]gtacgctggcggccgccaggccgt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) CTV-1 (Adult T acute lymphoblastic leukemia) HepG2 (hepatoblastoma) pancreas
- ASB for transcription factors
- CTCF_HUMAN CREB1_HUMAN TYY1_HUMAN RBM25_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.42 | 1.12 | 1.08 | n/a | No Hit | |||
| CREB1_HUMAN | -0.63 | 1.40 | 1.10 | n/a | No Hit | |||
| TYY1_HUMAN | n/a | 3.10 | 1.50 | n/a | No Hit | |||
| RBM25_HUMAN | -1.56 | 1.97 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood