rs3741915 chr12:6534761 T>G
- Sequence
gtgggggaggggaggggaggcgtg[T/G]gtgtcggccggggccactaggcgc
- ASB in cell types
- RCC4 (kidney cancer cell line) upper lobe of left lung BEAS-2B (bronchial epithelium) primary B-CLL cells
- ASB for transcription factors
- CTCF_HUMAN GCR_HUMAN HIF1A_HUMAN E2F8_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.24 | -0.01 | 1.05 | n/a | No Hit | |||
| GCR_HUMAN | 1.33 | 0.48 | 1.00 | n/a | No Hit | |||
| HIF1A_HUMAN | 1.32 | -1.24 | 1.00 | -0.82 | Weak Concordant | |||
| E2F8_HUMAN | 1.74 | -1.37 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood