rs3743188 chr15:101652215 C>T
- Sequence
gtgggcccggcctcctcgcagctc[C/T]cggggccctgctgccactcagccc
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) EA.hy 926 (human umbilical vein endothelial cell line) foreskin keratinocyte
- ASB for transcription factors
- TYY1_HUMAN HIF1A_HUMAN RBBP5_HUMAN VEZF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 3.22 | 0.96 | 1.41 | n/a | No Hit | |||
| HIF1A_HUMAN | 2.50 | -0.55 | 2.00 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.73 | 0.87 | 2.25 | n/a | n/a | |||
| VEZF1_HUMAN | -1.00 | 1.90 | 2.00 | -0.86 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood