rs3743238 chr15:99251490 T>C

Sequence
cccgccccgcccgccgtcccccgc[T/C]tggcttccagcgccgcttgcgctc
ASB in cell types
breast tumor CD14+ monocytes monocytes from periferal blood
ASB for transcription factors
ESR1_HUMAN STAT1_HUMAN SRBP2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.79 -5.12 5.0·10-31.00 2.00 n/a No Hit
STAT1_HUMAN 2.60 n/a 6.6·10-31.00 2.00 n/a No Hit
SRBP2_HUMAN 2.58 n/a 0.011.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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