rs3743267 chr15:60479090 A>G

Sequence
cctcacattgtcgcgcgcgcccaa[A/G]aaagaccatatttaaaggatgtgg
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) BEAS-2B (bronchial epithelium) breast tumor
ASB for transcription factors
GCR_HUMAN VEZF1_HUMAN ESR1_HUMAN RARA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 0.47 1.08 1.005.0·10-5 1.14 n/a No Hit
VEZF1_HUMAN 2.65 -1.70 7.2·10-41.00 2.00 n/a No Hit
ESR1_HUMAN -0.23 3.23 1.001.1·10-3 1.75 n/a No Hit
RARA_HUMAN 2.44 -0.01 0.010.74 1.25 n/a No Hit
ZF64B_HUMAN n/a 2.19 1.000.04 1.00 2.78 Concordant
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Motif analysis

ZF64B_HUMAN Concordant
ZF64B_HUMAN pic

Genetic associations

GRASP adiponectin levels,  height,  mitral annular calcium,  rheumatoid arthritis
GTEx eQTL Adipose_Visceral_Omentum,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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