rs3743623 chr16:83807955 G>T
- Sequence
gggagaaactactactcccataat[G/T]ccccgcggtcccgcgagctgccag
- ASB in cell types
- CD14+ monocytes thymus-derived CD34- cells HCT-116 (colon carcinoma)
- ASB for transcription factors
- STAT1_HUMAN BC11B_HUMAN HCFC1_HUMAN CDK9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.78 | n/a | 2.00 | n/a | No Hit | |||
| BC11B_HUMAN | 3.03 | -5.36 | 2.00 | n/a | n/a | |||
| HCFC1_HUMAN | 0.47 | n/a | 2.75 | n/a | n/a | |||
| CDK9_HUMAN | -0.47 | 1.47 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Nerve_Tibial, Testis, Thyroid