rs3743714 chr16:66549802 T>C

Sequence
ggtaacggccgatggccgcccccg[T/C]cccagccgcagccggggaggaaat
ASB in cell types
glioblastoma cells 22RV1 (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN ANDR_HUMAN MBD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.43 0.07 1.1·10-41.00 1.32 n/a No Hit
ANDR_HUMAN 2.90 n/a 9.8·10-31.00 2.00 n/a No Hit
MBD4_HUMAN 0.03 1.61 1.000.01 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI 3-hydroxypropylmercapturic acid levels in smokers
GTEx eQTL Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Liver,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Whole_Blood

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