rs3743741 chr16:68311042 G>C
- Sequence
cgacgctgcgaggtcccgccccgc[G/C]tgctggccgcggtaaaagtggtag
- ASB in cell types
- HepG2 (hepatoblastoma) GM02255 (Lymphoblastoid Cell Lines) pancreas foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN TYY1_HUMAN MAX_HUMAN MYCN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.07 | 2.72 | 1.55 | 5.00 | Concordant | |||
| TYY1_HUMAN | 0.48 | 3.08 | 1.75 | -1.56 | Weak Discordant | |||
| MAX_HUMAN | 2.16 | -0.22 | 1.31 | -3.62 | Concordant | |||
| MYCN_HUMAN | 1.60 | -0.60 | 1.00 | -3.67 | Concordant | |||
| STAG1_HUMAN | 0.66 | 1.82 | 1.12 | n/a | n/a |
Items per page:
1 – 5 of 7
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood