rs3743884 chr16:370678 C>T
- Sequence
agcagctcaaggcaccgttagcta[C/T]gtgcggccccggcgtttccgcgaa
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) brain prefrontal cortex region tissues
- ASB for transcription factors
- ZF64B_HUMAN SP2_HUMAN OLIG2_HUMAN HIF1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZF64B_HUMAN | 3.27 | 0.11 | 1.50 | n/a | No Hit | |||
| SP2_HUMAN | 0.99 | -0.76 | 2.25 | n/a | No Hit | |||
| OLIG2_HUMAN | -0.17 | 2.37 | 1.00 | n/a | No Hit | |||
| HIF1A_HUMAN | 2.08 | n/a | 1.50 | -3.27 | Concordant | |||
| ZBT26_HUMAN | 1.57 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood