rs3744012 chr17:75844486 C>T

Sequence
gggacggaagggtgagggtttcac[C/T]gcttcggagaggcagtctcccagg
ASB in cell types
CD14+ monocytes MDM(monocyte derived macrophages)
ASB for transcription factors
STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.67 n/a 0.011.00 3.00 2.43 Discordant
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Motif analysis

STAT1_HUMAN Discordant
STAT1_HUMAN pic

Genetic associations

GTEx eQTL Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Thyroid,  Whole_Blood

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