rs3744376 chr17:60078703 G>A
- Sequence
cagggcgcgccgcctacctccggg[G/A]ccacgccactgccctcgctgtagt
- ASB in cell types
- glioblastoma patient-derived cell model HeLa (cervical adenocarcinoma) adult erythroblasts GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- RBBP5_HUMAN BRD4_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | 2.74 | -5.07 | 2.00 | n/a | n/a | |||
| BRD4_HUMAN | 0.22 | 1.58 | 2.20 | n/a | n/a | |||
| TCF21_HUMAN | 2.10 | n/a | 4.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood