rs3744382 chr17:59707167 C>A
- Sequence
actagaaattctgagtcttcccct[C/A]cccagcagcctgttcctttcctcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MDM(monocyte derived macrophages)
- ASB for transcription factors
- SPI1_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.24 | -0.94 | 2.00 | -0.43 | Weak Concordant | |||
| CREB1_HUMAN | -5.33 | 1.88 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP adiponectin levels, alzheimers disease, birth weight, diastolic blood pressure (dbp), infant head circumference, tetrology of fallot, transmission distortion, waist hip ratio
GTEx eQTL Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood