rs3745556 chr19:6737633 G>A
- Sequence
tggcgcccaagcccgcccaccgat[G/A]agccaatcgccgcacggcggggcc
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- JUN_HUMAN NFYA_HUMAN KLF8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.61 | 0.19 | 2.00 | n/a | No Hit | |||
| NFYA_HUMAN | 2.25 | -1.90 | 1.50 | -0.58 | Weak Concordant | |||
| KLF8_HUMAN | n/a | 2.50 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Testis, Thyroid