rs3745579 chr19:9913646 C>T
- Sequence
cctccgcctcatgccccgcggccg[C/T]ccgccgcgcgtcccttctctggcc
- ASB in cell types
- K562 (myelogenous leukemia) UCLA1 hESCs bipolar neuron
- ASB for transcription factors
- E2F6_HUMAN AP2C_HUMAN EZH2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F6_HUMAN | -0.86 | 2.71 | 1.83 | n/a | No Hit | |||
| AP2C_HUMAN | -2.24 | 2.60 | 1.00 | 0.55 | Weak Concordant | |||
| EZH2_HUMAN | -0.27 | 1.75 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis